GgaEX6014806 @ galGal3
Exon Skipping
Gene
ENSGALG00000008819 | LRSAM1
Description
NA
Coordinates
chr17:1927784-1929142:-
Coord C1 exon
chr17:1929061-1929142
Coord A exon
chr17:1928642-1928790
Coord C2 exon
chr17:1927784-1928373
Length
149 bp
Sequences
Splice sites
3' ss Seq
ACCTCTGCTTGTGTTTGTAGAGC
3' ss Score
9.06
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
ATGGGCATTGCAGAGACTGGCCTGCAGCGTGCCATCCTCAGACGGGCACAGGAGATCCTGGCTGTGGCGAAGATGATCCCAG
Seq A exon
AGCTGCTGAGGACGGAGGACGCTGAGATCCCTGCAGCTGCACAACCCAGTGCCCCTGAGGAGGAGGCCCCGAGTTCTGTGGTCCCCACCGCTCCCCTGCTGCAGTGGGATGAGAAGAAGTCAGAGTGCGTTGTCTGCATGGAGCAGGAG
Seq C2 exon
GCCCAGATGATTTTCCTGCCTTGTGGCCATGTGTGCTGCTGCCAGACCTGCTGCAAGCGGCTACAGACCTGTCCCCTGTGCCGCAGGGACATCACACAGCACGTCCGCATCTTCTACAGCAGCTAGGCGGGCTGGAGGAAGGCATGGCTGCCCAGCACCACCCTCATCACTCCGTCCCAGGGCAAGGCTCTTCTGTCAGTATTAAATACACTCGCACAGCATGACCAGCGCTGCCCTCACCCTGCATGCAGCCCTGGCTGGCTGCTGGCTGCACTCAGGGCTCTCAGCAGCCCTCCACCTTCCCGGTGGCTTTCCAGCCTTTGCCTTGGGTGCTTTCTTCATCTGCATCCACCATCCAGCCTGTTTGCCCAGCCTGAGAGCACTGGGTGATGGCACTGGGTATAATGGTGCTCGCTCTTCTCTGGCTGTATATTTGCCATCGGAATTGCCTGTTGCTCAGCAGGGATGCAGTTAGTGCCATTGCTTCTGAAGCCACTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008819-'23-26,'23-25,24-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.340 C2=0.000
Domain overlap (PFAM):
C1:
PF0053625=SAM_1=PD(30.6=67.9)
A:
PF139201=zf-C3HC4_3=PU(23.9=22.0)
C2:
PF139201=zf-C3HC4_3=PD(71.7=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGCGAAGATGATCCCAG
R:
GGTCATGCTGTGCGAGTGTAT
Band lengths:
247-396
Functional annotations
There are 2 annotated functions for this event
PMID: 15256501
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, two hybrid. ELM ID: ELMI001342; ELM sequence: TPTAPQ; Overlap: FULL
PMID: 15256501
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: mutation analysis, two hybrid. ELM ID: ELMI001343; ELM sequence: RPSAPP; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]