BtaEX6046287 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015375 | SH2D3C
Description
Bos taurus SH2 domain containing 3C (SH2D3C), mRNA. [Source:RefSeq mRNA;Acc:NM_001098039]
Coordinates
chr11:98441284-98445428:-
Coord C1 exon
chr11:98444974-98445428
Coord A exon
chr11:98443331-98443455
Coord C2 exon
chr11:98441284-98441819
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGAAGGTGTCTGCTCCACAGCAC
3' ss Score
5.4
5' ss Seq
CCGGTATGG
5' ss Score
8.44
Exon sequences
Seq C1 exon
GTCTCGGAGACCCTGGTGCAGCGCAATGGTGACTTCCTCATCCGGGACTCGCTCACCAGCCTGGGTGACTATGTGCTTACGTGCCGCTGGCGCAACCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCGGGTGAGAGCTACACCCACATCCAATACCTGTTCGAGCAGGAGAGCTTCGACCACGTGCCGGCCCTGGTGCGGTACCATGTGGGCAGCCGCAAGGCTGTGTCGGAGCAGAGCGGTGCCATCATCTACTGCCCGGTCAACCGCACCTTCCCACTGCGCTACCTGGAGGCCTGCTATGGCCTGGGCCAGGGCGGGGGCAAGGCCGCCAGCCCTGCCAGCCCCTCGGGCCCCAAGGGCAGCCACATGAAGCGGCGGAGCGTCACCATGACCGATGGGCTTACTGCTGACAAGGTCACCCGCAGTGATGGCTGCCCCACCAG
Seq A exon
CACATCACTGCCCCACCCCCGGGAATCCATCCGCAACTGTGCACTCAGCATGGACCAGATCCAAGACCTGCACTCGCCCATGTCCCCTATCTCCGAGAGCCCCAGCTCCCCTGCCTATAGTACCG
Seq C2 exon
TGACCCGTGTCCATGCCGCCCCTGCCGCCCCCTCAGCCACAGCACTGCCCGCCTCCCCTGTCACGCGCCGCTCCAGCGAACCCCAGCTGTGTCCCGGAAGTGTTCCAAAGCCCCACGGGGAGTCGGACAAGGGCCCTTACTCCAGCCCCTCCCACACCCTCTGCAAGGCCTCCCCATCACCGTCGCTCAGCAGCTACAGTGACCCGGACTCTGGCCATTACTGCCAGCTCCAGCCTCCTGTCCGTGGCAGCCGAGAGTGGGCAGCAGCTGAAGCCTCCGGCCGCCAGGCCAGGAGCTATGGGGAGAAGCTTAAGGAACTGTCAGAAAACGGGGCCTCCGAAGGGGACTGGGGCAGAACCTTCACAGTCCCTGTTGTGGAAGCCACCTCTTCCTTTAACCCGGCTACCTTCCAGTCACTGTTGATCCCCAAGGATAACCGGCCACTGGAGGTGGGCCTCCTGCGTAAGGTCAAGGAGCTGCTGGCAGAGGTCGACGCCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015375-'13-11,'13-10,15-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.977 C2=0.603
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(87.7=46.7)
A:
NO
C2:
PF0061714=RasGEF=PU(11.4=9.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCTTACTGCTGACAAGGTC
R:
GAGTCCGGGTCACTGTAGCT
Band lengths:
258-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]