GgaEX0027587 @ galGal3
Exon Skipping
Gene
ENSGALG00000005036 | SH2D3C
Description
NA
Coordinates
chr17:5545758-5551519:+
Coord C1 exon
chr17:5545758-5546206
Coord A exon
chr17:5547826-5547950
Coord C2 exon
chr17:5551313-5551519
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTCCCCTTCCCCAGCGT
3' ss Score
9.4
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTCTCAGAGAGCCTCGTGCAGAGGAACGGCGACTTCATCATCCGCGACTCGCTCACCAGTGTGGGTGACTACGTGCTGACGTGCCGCTGGCGCAACGAGCCCCTCCACTTCAAGATCAACAAGGTGACGGTGAAGTCCAGCGACGGCCGTACCCGCGTCCAGTACCTCTTCGAGCAGGAGAGCTTTGACAACGTGCCCGCCCTCGTCCGCTTCTACGTGGGCAACCGCAAGGCCATCTCCGAACAGAGCGGTGCCATCGTCTACTGCCCCATCAACCGCACCTTCCCCCTGCGCTACCTGGAGGCCAGCTATGGGCTCGCCAATGGGAAGCACGGGGGGTCCCACAGCCCGGCCTCCCAGAAGGGGGGGCACATCAAGAGGAGGAGCATCACCATGACAGACGGGCTGACAGCCGACAAGATCACCAGGGCTGAAGGGTGCTCCACCAG
Seq A exon
CGTGTCCCTGCCGCACCACAGGGACATCATCCGCAACTGTGCTGTCAGCGTGGACCAGATCCAGGACCTGCACTCCCCAATGTCACCCATCTCAGAGAACCCCACCTCACCCGCGTACAGCACAG
Seq C2 exon
AAGGGCCGCCGCTGACCAACACCACCTTTCCCCACGTCATGCCCCTGGTGACTCTCCTGGAGAGGGACGACGCGCTGGTGGACAGCCCTGAGCCCTGGGAGGCCACGGACAATGGCGTGGAGGTGGTCATGGCCCACCTGGAAGCTGCACGGATGGTGGCCCACCACGGAGGACTGTACCACACCAACGCCGAGGTGAAACTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=0.465 C2=0.129
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(87.7=47.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCCATCTCCGAACAGAG
R:
GGGAAAGGTGGTGTTGGTCAG
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]