DreEX6087247 @ danRer10
Exon Skipping
Gene
ENSDARG00000028099 | sh2d3ca
Description
SH2 domain containing 3Ca [Source:ZFIN;Acc:ZDB-GENE-080102-1]
Coordinates
chr10:10298869-10304105:+
Coord C1 exon
chr10:10298869-10298943
Coord A exon
chr10:10300767-10300891
Coord C2 exon
chr10:10303615-10304105
Length
125 bp
Sequences
Splice sites
3' ss Seq
TGCATGTTTGTCCTTTCCAGCCC
3' ss Score
9.29
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
TGCCGCCCAGCCTACACAGCCAGATGAGCCTCAGACAGTCGAGCCAGAGGTGAAACCAGCGGAGGGCAACAGCTG
Seq A exon
CCCTTCCACAGTGCACCATAAGGATGCCATGAGGAACTGTGCCATGAGTATGGATCAGATCCAAGAGTACCGCTGTCCACTGTCCCCTGTGGGGGAAACACCTCAATCCCCTGCCTACAGCGCCA
Seq C2 exon
TCTCCCGCCACAGACATGGTTCAGGTGGACGTGTGCTTGCCGTCATCCCGCCTTCTCCAGTGATGAGGCGCTCCAGCGATCCCCACCTTTCGCCATCCTCCTCCAATAACAACATTCCCTGCTCAGAAACGGGCCCTAGCACTTACTCCACACCTGCTCATGGGTACCAATCTGAGAGTTTAGAGCAAGGCGGCAGCTACTGTGAGCTGAGACCCGGACAAGCCCCCATTCCTCCCTGCAAGAGCTACGTAGAGAGGTTGAAGGTGGAGGAGGGCCAAAGCCTGGGCTCTGGAGCTCCAGACGGAGTGGAGGGCTTCATGCTCCCCCTGGTGGAGACTAGTTCATCCTTCAAACCAGGGAAATACCAGTCGACTCTTCTGCCACCTGAAAATAAACCTCTGGAGATGAGCGTGTTGAAGAGGGTGAAGGAGCTTCTGGCGGAGGTGGATCCCAAAACGGCCGCCAAGCACATCACCAAGGCTGACTGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028099-'4-5,'4-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.767 C2=0.591
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0061714=RasGEF=PU(9.6=10.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTCGAGCCAGAGGTGAAAC
R:
GGGTCTCAGCTCACAGTAGCT
Band lengths:
255-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]