MmuEX6100606 @ mm10
Exon Skipping
Gene
ENSMUSG00000059013 | Sh2d3c
Description
SH2 domain containing 3C [Source:MGI Symbol;Acc:MGI:1351631]
Coordinates
chr2:32745835-32749685:+
Coord C1 exon
chr2:32745835-32746289
Coord A exon
chr2:32747022-32747146
Coord C2 exon
chr2:32749153-32749685
Length
125 bp
Sequences
Splice sites
3' ss Seq
CATGGAATCTCTGTCCACAGCAC
3' ss Score
7.51
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
Exon sequences
Seq C1 exon
GTCTCTGAGACTCTGGTGCAGCGGAACGGCGACTTCCTCATCCGAGACTCACTCACCAGCCTAGGGGACTATGTGCTCACGTGCCGCTGGCACAATCAGGCCTTGCACTTCAAGATCAACAAGGTGGTGGTGAAGGCCGGAGAGAGCTACACCCACATCCGGTACCTCTTCGAGCAGGAGAGCTTCGACCACGTGCCTGCCCTCGTGCGCTACCACGTGGGCAGCCGTAAGGCCGTGTCCGAACAGAGCGGGGCTATCATCTACTGCCCTGTCAACCGCACCTTCCCACTGCGCTACCTCGAGGCCAGCTATGGCCTGAGCCAGGGCAGCAGCAAGACTGCCAGCCCAGCCAGCCCCTCAGGCTCCAAGGGCAGCCACATGAAGAGGCGAAGCATTACCATGACTGATGGACTCACCACTGACAAGGTCACCCGCAGCGATGGCTGCCCCAACAG
Seq A exon
CACCTCATTACCCCATCCTCGAGACTCCATCCGAAACTGTGCCCTCAGCATGGACCAGATCCCAGATCTCCACTCACCCCTGTCTCCTATCTCCGAGAGCCCCAGCTCTCCTGCCTATAGCACTG
Seq C2 exon
TAACCCGAGTCCATGCTCCTTCTGCCACCCCCTCTACTTCAGCACAGCCTGCCTCCCCAGTTGCCCGCCGCTCCAGCGAACCTCAGCTATGTCCTGGAAATACTCCAAAGCCTCCTGGGGAGTCAGACAGGGCCCCTCACGCAAGCCCATCCCACACCCTCTGCAAGGCCTCGCCATCACCATCACTCAGCAGCTACAGTGACCCGGACTCTGGTCACTACTGTCAGCTCCAGCCTCCGGTCCGTGGCAGCCGAGAGCAGGCCGCAGGAGAGACTCCCCGGAAGGCTAGGGGCTCCGGAGAGAGGCAAAAGGAACTGTTAGAAAATGGAGTCTCTGACGGGGAGTGGGGCAAGACCTTCACAGTCCCTGTAGTAGAAGCCACCTCCTCTTTCAACCTGGCTACCTTCCAGTCCCAGCTGATCCCCAAGGAGAACCGGCCTCTGGAGGTGGCCCTTCTGCGCAAGGTCAAGGAGCTGCTGTCTGAGGTGGATGCCCGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059013-'23-25,'23-23,25-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=1.000 C2=0.635
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(87.7=46.7)
A:
NO
C2:
PF0061714=RasGEF=PU(10.1=9.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACAGAGCGGGGCTATCATCT
R:
GAAGTAGAGGGGGTGGCAGAA
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types