GgaEX0027587 @ galGal4
Exon Skipping
Gene
ENSGALG00000005036 | SH2D3C
Description
SH2 domain containing 3C [Source:HGNC Symbol;Acc:HGNC:16884]
Coordinates
chr17:4917269-4920861:+
Coord C1 exon
chr17:4917269-4917397
Coord A exon
chr17:4919636-4919760
Coord C2 exon
chr17:4920746-4920861
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTTCCCCTTCCCCAGCGT
3' ss Score
9.4
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
TTCTCCAAGGAGAAATACATCCTGGACTCGTCACCGGAGAAGCTTCACAAGGAGCTGGAAGAGGAGCTGAAGCTGAGCAGCACCGACCTGCGCAGCCACGCGTGGTACCACGGCCGCATCCCGCGGGAG
Seq A exon
CGTGTCCCTGCCGCACCACAGGGACATCATCCGCAACTGTGCTGTCAGCGTGGACCAGATCCAGGACCTGCACTCCCCAATGTCACCCATCTCAGAGAACCCCACCTCACCCGCGTACAGCACAG
Seq C2 exon
GTTGCTCGGATATTGGGCGTAAGTGCAGAGATGCAGCGGCTCATGGGGGTGAGCTCCGGCATGGAGCTGCTCACCCTGCCCCATGGCCACCAGCTCCGGCTCGACCTGCTGGAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005036_MULTIEX1-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=0.465 C2=0.000
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(9.9=18.6)
A:
NO
C2:
PF0061714=RasGEF=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAGGAGAAATACATCCTGGACT
R:
CGTTCCAGCAGGTCGAGC
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]