RnoEX0080385 @ rn6
Exon Skipping
Gene
ENSRNOG00000054560 | Sh2d3c
Description
SH2 domain containing 3C [Source:RGD Symbol;Acc:1307287]
Coordinates
chr3:11783957-11788082:+
Coord C1 exon
chr3:11783957-11784411
Coord A exon
chr3:11785127-11785251
Coord C2 exon
chr3:11787553-11788082
Length
125 bp
Sequences
Splice sites
3' ss Seq
CATGGAATCCCTGCCCACAGCAC
3' ss Score
5.99
5' ss Seq
CCGGTAAGC
5' ss Score
8.8
Exon sequences
Seq C1 exon
GTCTCCGAGACCCTGGTGCAGCGGAACGGCGACTTCCTCATCCGTGACTCTCTCACCAGTCTGGGGGACTATGTGCTCACGTGCCGCTGGCACAATCAGACCTTGCACTTCAAGATCAACAAGGTGGTGGTGGAGGCTGGCGAGAGCTACACCCACATCCGGTACCTCTTCGAGCAGGAGAGCTTCGACCACGTGCCCGCCCTTGTGCGCTATCATGTGGGCAGCCGTAAGGCCGTGTCCGAACAGAGTGGGGCCATCATCTACTGCCCCGTCAACCGCACCTTCCCACTGCGCTACCTCGAGGCCAGCTACGGCCTGAGCCAGGGCAGCAGCAAGGCTGCCAGCCCAGCCAGCCCCTCAGGCCCCAAGGGCAGCCACATGAAAAGACGCAGCGTTACCATGACTGATGGGCTCACCTCTGACAAGGTCACCCGCGGAGATGGCTGCCCCAACAG
Seq A exon
CACCTCACTACCCCATCCTCGAGACTCCATCCGAAACTGCGCCCTCAGCATGGACCAGATCCCAGATCTACACTCTCCGCTGTCTCCTATCTCCGAGAGTCCCAGCTCCCCTGCCTATAGCACCG
Seq C2 exon
TAACCCGCGTCCATGCTGCTTCTGCTGCCCCCTGTACAGCACAGCCCGCCTCCCCAGTTGCCCGCCGCTCCAGTGAACCTCAGCTATGTCCTGGAGGTGCTCCAAAGCCTCCTGGGGAGTCAGACAGGGGCCCTCACGCAAGCCCGTCCCACACCCTCTGCAAGGCCTCGCCATCACCGTCACTCAGCAGCTACAGTGACCCAGACTCTGGCCACTATTGTCAGCTCCAGCCTCCTGTGCGCTGTAGCCGAGAGCCGACAGCAGGAGAGACCCCCCGGAAGGCTCGGAGCTCTGCAGAGAGGCAAAAGGAACTGTCAGAAAATGGAGTCCCTGAGGGGGAGTGGGGCAAGACCTTCACAGCCCCTGTAGCAGAAGCCACCTCATCTTTCAACCTGGCTACCTTCCAGTCCCAGCTGATCCCCAAGGAGAACCGGCCTCTGGAGGTGGGCCTGCTGCGCAAAGTCAAGGAGCTGCTGTCGGAGGTGGATGCCCGGACGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054560-'13-16,'13-15,14-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.977 C2=0.720
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(87.7=46.7)
A:
NO
C2:
PF0061714=RasGEF=PU(10.1=9.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGGCTCACCTCTGACAA
R:
CACTGTAGCTGCTGAGTGACG
Band lengths:
249-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]