BtaEX6046384 @ bosTau6
Exon Skipping
Description
Bos taurus golgin A2 (GOLGA2), mRNA. [Source:RefSeq mRNA;Acc:NM_001192195]
Coordinates
chr11:98879638-98880170:-
Coord C1 exon
chr11:98880068-98880170
Coord A exon
chr11:98879865-98879971
Coord C2 exon
chr11:98879638-98879791
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCCCTCCTCGCCTCCCGCAGGAG
3' ss Score
10.25
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGCCGCTTTACAGAGCTCATGCAGGAGAAGGTGGATCTGAAGGAGCGGGTGGAGGAGCTGGAGCATCGCTGTATACAGCTGTCTGGAGAGACGGACACTATTG
Seq A exon
GAGAGTATATCGCCCTCTATCAGAGTCAGAGGGCGGTGCTGAAGGCCCGGCATCAGGAGAAGGAGGAATACATTAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
Seq C2 exon
GTGAAGCTGTTGGAGCTCCAGGAACTGGTTTTATGCCTGGTGGGTGAACGAAATGAATGGTATGGCAAATTCCTGGCTGCCCAGAACCCTGCTGGTGAGCCCACTACAGCGCCCCACACCTGCCAGGAGCCCAGCACTGCTGACAGTGAGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011317-'30-29,'30-28,31-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.194 C2=0.538
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.5=100)
A:
PF150701=GOLGA2L5=FE(5.7=100)
C2:
PF150701=GOLGA2L5=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTTACAGAGCTCATGCA
R:
AGCAGTGCTGGGCTCCTG
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]