GgaEX0006704 @ galGal3
Exon Skipping
Gene
ENSGALG00000004881 | GOLGA2
Description
NA
Coordinates
chr17:5644175-5645498:+
Coord C1 exon
chr17:5644175-5644277
Coord A exon
chr17:5645012-5645118
Coord C2 exon
chr17:5645330-5645498
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACGCTTCTCTTGTGTTCCAGGGG
3' ss Score
10.52
5' ss Seq
AAGGCAAGG
5' ss Score
2.76
Exon sequences
Seq C1 exon
TCCCGTTTCACAGATCTGATACAGGAGAAAGCTGATCTGAAGGAACGGCTAGAAGAGCTGGAACATCGCTGCATACAGCTGTCTGGGGAAACAGACACCATTG
Seq A exon
GGGAATATATAGCATTATACCAGAGTCAAAGGGCTATCCTCAAACAGCGGCACCAGGAGAAAGAAGAGTACATCAGCAGGCTGGCTCAGGATAAGGAAGAGATGAAG
Seq C2 exon
ATAAAATTACTGGAACTGCAGGATTTAGTGATGCGTCTGGTCAAGGAAAGAAATGAATGGTACAGCAAGTACGTAGCAGCTGCTCAAAGCCCAGAGCTGTTAGCAAGCCAGAATGAAAAGGCACTTCCAGTGGAGAGGCGCATCGAACTGAACGCTACTGATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004881_CASSETTE5
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.139 C2=0.088
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.4=100)
A:
PF150701=GOLGA2L5=FE(5.5=100)
C2:
PF150701=GOLGA2L5=FE(8.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCTGATCTGAAGGAACGGC
R:
TCTCCATCAGTAGCGTTCAGT
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]