DreEX0035467 @ danRer10
Exon Skipping
Gene
ENSDARG00000063197 | golga2
Description
golgin A2 [Source:ZFIN;Acc:ZDB-GENE-081030-1]
Coordinates
chr5:1378596-1383822:-
Coord C1 exon
chr5:1383655-1383822
Coord A exon
chr5:1381388-1381494
Coord C2 exon
chr5:1378596-1378764
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGCTTCTGTTTGTGGTGTAGGTG
3' ss Score
9.23
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
ACGGCTCCGAGGGCGTCCCGGTGGAGGTGCACGAGGCTCTGCGAGTGGCGATGGAGAAGCTGCAGGAGAGATTCACTAAACTGATGCAGGAGAAAGCAGATCTGAAGGAGCGTCTGGAGGAGCTGGAGCACCGCTGCATTCAGCTCTCCGGAGAAACTGACACTATCG
Seq A exon
GTGAATACATCGCGCTGTATCAGAACCAGAGAGCCATCATGAAGCAAAAGCACGTTGAAAAGGAGCAGTACATTAACATGCTGGCCAAAGACAAGGAGGAGATGAAG
Seq C2 exon
ACGAAGCTGGCGGAGCTGCAGGATCTGGTGATGCGTCTGGTGGGCGAGCGTAACGAGTGGTACAGCAGATATATGAGCGCTGTGGGAAACCGGGATCTGCTGAACTCTAATGCGGAGCAGATCCATCCTGCAGAGAGACGCATGGAGATCAGCGGTGTGGACGCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063197-'34-34,'34-32,35-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=0.194 C2=0.333
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(8.5=100)
A:
PF150701=GOLGA2L5=FE(5.3=100)
C2:
PF150701=GOLGA2L5=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAAGCTGCAGGAGAGAT
R:
TCTCTGCAGGATGGATCTGCT
Band lengths:
253-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]