MmuEX7000862 @ mm10
Exon Skipping
Gene
ENSMUSG00000002546 | Golga2
Description
golgi autoantigen, golgin subfamily a, 2 [Source:MGI Symbol;Acc:MGI:2139395]
Coordinates
chr2:32305773-32306316:+
Coord C1 exon
chr2:32305773-32305875
Coord A exon
chr2:32305977-32306083
Coord C2 exon
chr2:32306160-32306316
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTGCCGTCTCCACAGGAG
3' ss Score
10.96
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGCCGCTTCCTGGAGGTCATGCAGGAGAAAGTGGAGCTCAAGGAGAGGGTAGAGGAGCTTGAACATTGCTGCATTCAGCTTTCTGGAGAGACAGACACCATTG
Seq A exon
GAGAGTACATTGCCCTTTACCAAAATCAGAGGGCGGTGCTGAAGGCTCGGCATTTGGAGAAGGAAGAATACATCAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
Seq C2 exon
GTGAAGCTGCTGGAGCTCCAGGAGCTGGTGTTGAGGCTTGTGAACGAGCGCAATGAATGGCAGGGCAAGTTCCTGGCCGTCTCTCAGAACCCTGGTGACGTGCTCACCCCAGTGCCCACAGGCTCCCAGGAATTTGGTGCTGCTGACCAGCAGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002546-'44-56,'44-53,52-56=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.028 C2=0.358
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.5=100)
A:
PF150701=GOLGA2L5=FE(5.7=100)
C2:
PF150701=GOLGA2L5=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCTGGAGGTCATGCAG
R:
TCAGCAGCACCAAATTCCTGG
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types