RnoEX0039178 @ rn6
Exon Skipping
Gene
ENSRNOG00000011884 | Golga2
Description
golgin A2 [Source:RGD Symbol;Acc:620282]
Coordinates
chr3:11335418-11335959:+
Coord C1 exon
chr3:11335418-11335520
Coord A exon
chr3:11335618-11335724
Coord C2 exon
chr3:11335803-11335959
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTGCCGTCCCCACAGGAG
3' ss Score
11.58
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
AACCGCTTCCTGGAGGTCATGCAGGAGAAAGTGGAGCTCAAGGAGCGGGTGGAGGAGCTTGAACATTGCTGTATCCAGCTTTCTGGGGAGACAGACACTATTG
Seq A exon
GAGAGTACATTGCCCTCTACCAAAACCAGAGGGCAGTGCTGAAGGCTCGGCATTTGGAGAAGGAAGAGTATATCAGCCGGCTGGCTCAGGACAAGGAGGAGATGAAG
Seq C2 exon
GTAAAACTGCTAGAGCTTCAGGAGCTGGTGTTGAGGCTTGTGAACGAGCGCAATGAATGGCAGGGCAAGTTCCTGGCCGTGTCTCAGAACCCTGCTGATGTGCCTGCCCCAGTGCCCACAGGCTCCCAGGAATTTGGCGCTGCTGACCAGCAAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011884-'35-42,'35-40,37-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.453
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(5.5=100)
A:
PF150701=GOLGA2L5=FE(5.7=100)
C2:
PF150701=GOLGA2L5=FE(8.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGTCATGCAGGAGAAAGTG
R:
CTGGTCAGCAGCGCCAAATTC
Band lengths:
242-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]