HsaEX6063210 @ hg38
Exon Skipping
Gene
ENSG00000167110 | GOLGA2
Description
golgin A2 [Source:HGNC Symbol;Acc:HGNC:4425]
Coordinates
chr9:128257369-128257892:-
Coord C1 exon
chr9:128257790-128257892
Coord A exon
chr9:128257601-128257707
Coord C2 exon
chr9:128257369-128257525
Length
107 bp
Sequences
Splice sites
3' ss Seq
TGAGCCCTGTCCTCCCGCAGGAG
3' ss Score
9.98
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
AGCCGCTTTATGGAGCTCATGCAGGAGAAGGCAGACCTGAAGGAGAGGGTAGAGGAACTGGAACATCGCTGCATCCAGCTTTCTGGAGAGACAGACACCATTG
Seq A exon
GAGAGTACATTGCACTGTACCAGAGCCAGAGGGCAGTGCTGAAGGAGCGGCACCGGGAGAAGGAGGAGTACATCAGCAGGCTGGCCCAAGACAAGGAGGAGATGAAG
Seq C2 exon
GTGAAGCTGCTGGAGCTGCAGGAGCTGGTCTTACGGCTTGTGGGCGACCGCAACGAGTGGCATGGCAGATTCCTGGCAGCTGCCCAGAACCCTGCTGATGAGCCCACTTCAGGGGCCCCAGCCCCCCAGGAACTTGGGGCTGCCAACCAGCAGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167110-'49-55,'49-51,50-55=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.167 C2=0.547
Domain overlap (PFAM):
C1:
PF150701=GOLGA2L5=FE(11.9=100),PF078886=CALCOCO1=FE(27.0=100)
A:
PF150701=GOLGA2L5=FE(12.2=100),PF078886=CALCOCO1=FE(27.8=100)
C2:
PF150701=GOLGA2L5=FE(18.2=100),PF078886=CALCOCO1=PD(31.0=73.6)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTTTATGGAGCTCATGCA
R:
TGGCAGCCCCAAGTTCCT
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains