BtaEX6046526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012480 | TBC1D13
Description
Bos taurus TBC1 domain family, member 13 (TBC1D13), mRNA. [Source:RefSeq mRNA;Acc:NM_001206715]
Coordinates
chr11:99309991-99311444:+
Coord C1 exon
chr11:99309991-99310151
Coord A exon
chr11:99310343-99310400
Coord C2 exon
chr11:99311286-99311444
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTGTTGCTTGTTTTTCCTAGACT
3' ss Score
7.75
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAAGAGCAGAACATCAAGCCCCAGTTCTTTGCCTTCCGCTGGCTGACCCTGCTGCTGTCCCAGGAGTTCGTGCTGCCTGACGTCATCCGGATCTGGGACTCCCTCTTCGCCGACAGCAACCGCTTTGACTTCCTCCTCCTGGTCTGCTGTGCCATGCTCAT
Seq A exon
ACTGATTCGGGAGCAGTTGCTGGAAGGGGACTTTACCGTAAACATGAGGCTCCTGCAG
Seq C2 exon
GATTACCCTATCACAGACGTCTGCCAGGTCCTTCAGAAAGCCAAGGAACTCCAAGACTCACAGTAGCCTGGCGGCAAAAGACCCACGTTTGGAAGAGAAACCCCTGCTGACCCCGGTGCCCTGGCTTCTGGAACATGCAGAAGCCTGTGGGGTCCCATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012480-'17-21,'17-20,18-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(32.5=100)
A:
PF0056613=RabGAP-TBC=PD(4.3=35.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTCCTCCTCCTGGTCTG
R:
TCAGCAGGGGTTTCTCTTCCA
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]