MmuEX0046399 @ mm10
Exon Skipping
Gene
ENSMUSG00000039678 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:MGI Symbol;Acc:MGI:2385326]
Coordinates
chr2:30148623-30152013:+
Coord C1 exon
chr2:30148623-30148783
Coord A exon
chr2:30148931-30148988
Coord C2 exon
chr2:30149700-30152013
Length
58 bp
Sequences
Splice sites
3' ss Seq
GGCTCCTTGTTTCCCTGCAGACT
3' ss Score
10.45
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
CAAGAGCAGAGTATCAAGCCTCAGTTCTTTGCCTTCCGATGGCTGACATTGCTGCTGTCCCAGGAGTTCTTGCTGCCTGATGTCATCCGTATCTGGGACTCCCTCTTTGCTGATGGCAACCGATTCGATTTCCTCCTCCTGGTCTGCTGTGCTATGCTCAT
Seq A exon
ACTGATCCGGGAGCAGTTACTGGAGGGGGACTTCACTGTCAACATGCGGCTTCTGCAG
Seq C2 exon
GATTACCCCATCACAGACGTCTGCCAGATCCTACAGAAAGCCAAGGAACTCCAAGACTCGAAGTAACGTGGTAGCAGGGTCCCAGCTTTGGAAGAGCAGCCACTGCGCTTGCTCCACACCCTTGTTTTGGGGACACAAAGGAGCCTGTGAGAAAGCCAGCCTGAAGGGAAGCTACAGTCCTGGCCAGCTCCAGGTCTTCCCAGCCTGGTTCCCATGGTCCAGGGTGCTCCTGGAGCACGCCGCGATGCGCTCCTTCCCAGTGCTCAGCCCTGCCACACTCCCTGCACCTCAGCCCTGGGACCCTCCACCCAGACTGCTCAGCAGGGCCGGAGCTCCTGAACTGGCTTCCTGGGGCTGGGGCCATTTGGGGCCTAGGAGGCTGACAGGGTCCTGCCATGCCTCTGCCCAGTAGCTCCTCACCCCTGTGCTTTCATCTTCCCTGAGTCCTGGTCAGGGGAGGCAATTAGCTAATGGGCCAGAAACAACTTCTGAGTGTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039678_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(32.3=100)
A:
PF0056613=RabGAP-TBC=PD(4.3=35.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCCTCTTTGCTGATGGC
R:
CCCTGCTACCACGTTACTTCG
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types