RnoEX0088795 @ rn6
Exon Skipping
Gene
ENSRNOG00000015970 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:RGD Symbol;Acc:1591937]
Coordinates
chr3:8715020-8717515:+
Coord C1 exon
chr3:8715020-8715180
Coord A exon
chr3:8715346-8715403
Coord C2 exon
chr3:8716117-8717515
Length
58 bp
Sequences
Splice sites
3' ss Seq
GGGCTCTCCTTTCCCTGCAGACT
3' ss Score
10.26
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAAGAACAGAGTATCAAGCCTCAGTTCTTTGCCTTCCGATGGCTGACACTACTGCTGTCCCAGGAGTTCTTGTTACCTGATGTCATCCGGATATGGGACTCCCTCTTTGCTGATGGCAACCGCTTCGATTTCCTCCTCCTGGTCTGCTGTGCTATGCTCAT
Seq A exon
ACTGATCCGGGAGCAGTTGCTGAAGGGGGACTTCACTGTCAACATGCGGCTTCTGCAG
Seq C2 exon
GATTACCCCATCTCAGATGTCTGCAAGATCTTACAGAAAGCCAAGGAACTCCAAGACTCGAAGTAACCCGGCAGCAGGAGGCCCAGGACTAGAACATTCACCTGCGCTCTGCACCCTTCATTTTGGGACACAAAGGAGCCTGTGAGAGAGCCAGCCTGAGGGCCAGCTCCGGGTCTGCCCAGTCTGCGTCCAGGGTCCAGGCTGCTCCTGGAGCACACCGTGCTGCGCTCCTTCCCAGTGCTCAGCCTGCCACACCCTGCACTTCAGCCTGGGACCCTCACCAGACTGCTCAGAAGGGCTGGAGCTCCTCAGCTGGCTTCCTAGGGCTGTCACTGGGGGCCTAGGAGGCTTACAGGTCCTGTCAGGCCTCTGCCCAGGGGCTCCTCACCCTTTGTGCTTTCACCTTCCCTGGGCCCTGATCAGGGAGGGAATCGGCGAATGGGCCGGAAACCACTTCTGCGTGTTGGTGCTCAAGCTACCTGGGGAAGCACCTCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015970-'18-20,'18-18,19-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(32.3=100)
A:
PF0056613=RabGAP-TBC=PD(4.3=35.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCCTCTTTGCTGATGGC
R:
GCCGGGTTACTTCGAGTCTTG
Band lengths:
137-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]