HsaEX6063342 @ hg38
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr9:128805859-128810424:+
Coord C1 exon
chr9:128805859-128806019
Coord A exon
chr9:128806254-128806311
Coord C2 exon
chr9:128807814-128810424
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTGCTGCTGCTTTTCATAGGCT
3' ss Score
8.41
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAAGAGCAGAACATCAAGCCTCAGTTCTTTGCCTTCCGCTGGCTGACACTGCTGCTGTCCCAGGAGTTCTTGCTGCCTGACGTCATCCGCATCTGGGACTCCCTCTTCGCCGATGACAACCGCTTTGACTTCCTCCTCCTCGTCTGCTGCGCCATGCTCAT
Seq A exon
GCTGATCCGGGAGCAGTTGCTGGAAGGGGACTTCACTGTGAATATGCGGCTGCTGCAG
Seq C2 exon
GACTACCCCATCACAGATGTCTGCCAGATCCTGCAGAAAGCCAAGGAGCTCCAAGACTCAAAGTAGCCCGGCGGCAAGAGGCCCATGTTCCGGAGAGAAGCCTCCCGACCCTGTGCCCTGGCTCCCGGGACACATAGAAACCTGTAGGAACCCAGCCTGAGGGGAAGCCACAGGATCGGCCCGAGACCCAGGCCATGCCCACTGGGGACACACTGTGCCGTGCTCCTTCTGCCGCCACGCCCAGCTCCCCACCTGCCCTGCACTCTGCCCTCTTTGCCCAGGATACTGAGGAGGGCTGGAGCTCGGGAAGTTGTCCTTCCTGGGCCAGGGCCGTTTCTGGCACTGGGAGGCTGGCAGGGGCCCCTCCCTGCCTCGGCTCTGCCGCCCCAGCCTCAGTTCCTGCTTCTGGTCTTCTCCTGGGCTCCACTCAGGGGAGGTGCTTGGCCAATGGGCCAGAAACCGCTTCTGAGCGGGGCACTTCGGCTGCTCCACAGGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(58.2=100)
A:
PF0056613=RabGAP-TBC=PD(7.7=35.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGCTGCCTGACGTCATC
R:
TCTGCAGGATCTGGCAGACAT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains