HsaEX6063342 @ hg19
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131568138-131572711:+
Coord C1 exon
chr9:131568138-131568298
Coord A exon
chr9:131568533-131568590
Coord C2 exon
chr9:131570093-131572711
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTGCTGCTGCTTTTCATAGGCT
3' ss Score
8.41
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
CAAGAGCAGAACATCAAGCCTCAGTTCTTTGCCTTCCGCTGGCTGACACTGCTGCTGTCCCAGGAGTTCTTGCTGCCTGACGTCATCCGCATCTGGGACTCCCTCTTCGCCGATGACAACCGCTTTGACTTCCTCCTCCTCGTCTGCTGCGCCATGCTCAT
Seq A exon
GCTGATCCGGGAGCAGTTGCTGGAAGGGGACTTCACTGTGAATATGCGGCTGCTGCAG
Seq C2 exon
GACTACCCCATCACAGATGTCTGCCAGATCCTGCAGAAAGCCAAGGAGCTCCAAGACTCAAAGTAGCCCGGCGGCAAGAGGCCCATGTTCCGGAGAGAAGCCTCCCGACCCTGTGCCCTGGCTCCCGGGACACATAGAAACCTGTAGGAACCCAGCCTGAGGGGAAGCCACAGGATCGGCCCGAGACCCAGGCCATGCCCACTGGGGACACACTGTGCCGTGCTCCTTCTGCCGCCACGCCCAGCTCCCCACCTGCCCTGCACTCTGCCCTCTTTGCCCAGGATACTGAGGAGGGCTGGAGCTCGGGAAGTTGTCCTTCCTGGGCCAGGGCCGTTTCTGGCACTGGGAGGCTGGCAGGGGCCCCTCCCTGCCTCGGCTCTGCCGCCCCAGCCTCAGTTCCTGCTTCTGGTCTTCTCCTGGGCTCCACTCAGGGGAGGTGCTTGGCCAATGGGCCAGAAACCGCTTCTGAGCGGGGCACTTCGGCTGCTCCACAGGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-'15-16,'15-14,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(31.7=100),PF038478=TFIID_20kDa=PD(8.0=7.4)
A:
PF0056613=RabGAP-TBC=PD(7.7=35.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTGCTGCCTGACGTCATC
R:
TCTGCAGGATCTGGCAGACAT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)