GgaEX6015121 @ galGal3
Exon Skipping
Gene
ENSGALG00000004645 | TBC1D13
Description
NA
Coordinates
chr17:5899859-5901733:+
Coord C1 exon
chr17:5899859-5900019
Coord A exon
chr17:5900254-5900311
Coord C2 exon
chr17:5901314-5901733
Length
58 bp
Sequences
Splice sites
3' ss Seq
GAGTCATTTCCATCTTTCAGACT
3' ss Score
6.83
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
CAAGAGCAGAACATCAAACCCCAGTTCTTCGCCTTCCGCTGGCTGACACTGCTCTTGTCCCAAGAGTTCCTGCTGCCAGATGTCATCCGGATCTGGGACTCCCTCTTTGCTGACGATAAACGCTTCGATTTCCTGCTGTTGGTGTGTTGTGCCATGCTGAC
Seq A exon
ACTAATCCGGGATCAGTTGCTGGAAGGAGACTTCACTCTCAACATGAGGCTGCTACAG
Seq C2 exon
GATTATCCCATATCTGATGTTCACCTGATTTTGAAGAAAGCCAAGGAACTTCAGGATTCCAAATAGTCCATGAGCCCGACTAAAGGTGTTGGAGAAACTGTATGGCAGAGGATCTTAGGAGATGGCCCCGTGCAGTGCATTAAAACTCCTAGGGATCTCTGCAGGACTTCAGGTTTTGCATTTGGGCTACCGGCCACCTTGAAGACTTCCTTCTGCTCTATTTATTAGGTCAAGGACTGATTACTTCCCTATCTGCTTGGGTCCTGCACTCCAGATTTTTCAACTCTCAAATGCCTCTGTGCTGCCAAAAGCAGTTCTTTGTATCTTTTTTAATGACTTGATGTGGGGAAAGAAACCATCTATCTGCATATCCCTCAAGGGCAGGATTCCTTCTGCATCATGAAAGTAGCTCACGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645-'11-17,'11-16,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=FE(32.3=100),PF038478=TFIID_20kDa=PD(8.0=7.4)
A:
PF0056613=RabGAP-TBC=PD(4.3=35.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCTTCGATTTCCTGCTGTT
R:
CCAACACCTTTAGTCGGGCTC
Band lengths:
134-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]