BtaEX6046529 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012480 | TBC1D13
Description
Bos taurus TBC1 domain family, member 13 (TBC1D13), mRNA. [Source:RefSeq mRNA;Acc:NM_001206715]
Coordinates
chr11:99304454-99308890:+
Coord C1 exon
chr11:99304454-99304613
Coord A exon
chr11:99307623-99307830
Coord C2 exon
chr11:99308727-99308890
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCCCTTGTCCCCTAGATG
3' ss Score
11.33
5' ss Seq
GAGGTAAAC
5' ss Score
7.2
Exon sequences
Seq C1 exon
GAGGTTGTGTCCAGACATATCCTTCTTCCAGAGGGCCACCGAGTACCCCTGCCTCCTCATCCTGGATCCTCAGAATGAATTCGAGACCCTTCGTAAGCGGGTGGAGCAGACGACCCTGAAATCCCAGACGGTGGCTCGGAACCGGAGCGGCGTCACAAAT
Seq A exon
ATGAGCTCCCCACAAAAGAACTCGGCACCCTCCATGAACGAGTACGTGGTGCTGCCCAACGGCTGTGAAGCCCACTGGGAGGTGGTGGAGCGGATCCTGTTCATCTACGCCAAGCTCAACCCCGGCATCGCTTACGTGCAGGGCATGAATGAGATCGTGGGGCCCCTCTACTACACCTTTGCCACCGACCCCAACAGCGAGTGGAGAG
Seq C2 exon
AGCATGCTGAGGCAGATACCTTTTTCTGCTTCACCAACCTCATGGCTGAGATCCGGGACAACTTCATCAAGAGCCTTGATGACTCCCAGTGTGGCATCACCTACAAGATGGAAAAGGTGTACTCCACCCTGAAGGATAAGGACATGGAACTCTACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012480-'11-15,'11-12,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=0.129 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(28.8=67.1)
C2:
PF0056613=RabGAP-TBC=FE(33.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTTCTTCCAGAGGGCCAC
R:
GTTCCATGTCCTTATCCTTCAGGG
Band lengths:
292-500
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]