RnoEX0088794 @ rn6
Exon Skipping
Gene
ENSRNOG00000015970 | Tbc1d13
Description
TBC1 domain family, member 13 [Source:RGD Symbol;Acc:1591937]
Coordinates
chr3:8709104-8713825:+
Coord C1 exon
chr3:8709104-8709263
Coord A exon
chr3:8712991-8713201
Coord C2 exon
chr3:8713662-8713825
Length
211 bp
Sequences
Splice sites
3' ss Seq
AGGCTCTCCCTTCTCTCCAGATG
3' ss Score
8.77
5' ss Seq
AAGGTAGAC
5' ss Score
7.07
Exon sequences
Seq C1 exon
GAGGCTGTGCCCAGATATATCCTTCTTCCAAAGAGCCACTGAGTACCCCTGCCTCCTCATCCTGGACCCGCAGAATGAGTTTGAGACCCTTCGTAAGCGTGTGGAGCAGACGACACTGAAGTCTCAGACGGTGGCCCGGAACCGAAGCGGGGTCACAAAT
Seq A exon
ATGAGCTCCCCGCACAAGAACAATGCACCATCAGCCCTGAACGAGTATGAGGTTCTACCCAATGGCTGCGAAGCCCACTGGGAGGTGGTGGAGCGGATCCTGTTCATCTATGCCAAGCTCAACCCTGGCATCGCTTATGTGCAGGGCATGAATGAGATCGTGGGCCCCCTCTACTACACTTTTGCCACTGACCCTAACAGCGAGTGGAAAG
Seq C2 exon
AGCACGCTGAAGCAGATACCTTTTTCTGCTTCACCAACCTCATGGCCGAGATACGGGACAACTTCATCAAGAGCCTGGATGACTCCCAGTGCGGCATCACCTACAAGATGGAAAAGGTGTACTCCACCTTGAAGGAGAAGGACGTGGAGCTCTACCTGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015970-'13-14,'13-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=0.155 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(29.3=67.6)
C2:
PF0056613=RabGAP-TBC=FE(32.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGCCACTGAGTACCCCTG
R:
AGCTTCAGGTAGAGCTCCACG
Band lengths:
293-504
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]