HsaEX0063770 @ hg19
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family, member 13 [Source:HGNC Symbol;Acc:25571]
Coordinates
chr9:131559334-131568298:+
Coord C1 exon
chr9:131559334-131559493
Coord A exon
chr9:131565529-131565739
Coord C2 exon
chr9:131568138-131568298
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCTCTTCTCCTCCAGATG
3' ss Score
12.48
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGGTTGTGCCCAGACATTTCCTTCTTCCAGAGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCAGAATGAGTTTGAAACCCTTCGTAAGAGAGTGGAACAGACAACACTGAAATCTCAGACGGTGGCCCGGAACCGGAGTGGGGTCACAAAT
Seq A exon
ATGAGCTCCCCACACAAGAACTCTGTGCCATCATCCCTAAATGAGTATGAGGTGCTGCCCAATGGCTGTGAGGCCCACTGGGAGGTGGTGGAGCGGATCCTGTTCATCTACGCCAAGCTCAACCCTGGCATCGCTTATGTGCAAGGCATGAATGAAATCGTGGGGCCCCTCTACTACACCTTTGCCACCGACCCCAATAGTGAGTGGAAAG
Seq C2 exon
CAAGAGCAGAACATCAAGCCTCAGTTCTTTGCCTTCCGCTGGCTGACACTGCTGCTGTCCCAGGAGTTCTTGCTGCCTGACGTCATCCGCATCTGGGACTCCCTCTTCGCCGATGACAACCGCTTTGACTTCCTCCTCCTCGTCTGCTGCGCCATGCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.113 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PD(16.5=33.3),PF0056613=RabGAP-TBC=PU(31.9=53.7)
A:
PF0056613=RabGAP-TBC=PU(30.5=71.8)
C2:
PF0056613=RabGAP-TBC=FE(31.7=100),PF038478=TFIID_20kDa=PD(8.0=7.4)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGTGCCCAGACATTTCCT
R:
GGAGGAAGTCAAAGCGGTTGT
Band lengths:
294-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)