HsaEX0063770 @ hg38
Exon Skipping
Gene
ENSG00000107021 | TBC1D13
Description
TBC1 domain family member 13 [Source:HGNC Symbol;Acc:HGNC:25571]
Coordinates
chr9:128797055-128804119:+
Coord C1 exon
chr9:128797055-128797214
Coord A exon
chr9:128803250-128803460
Coord C2 exon
chr9:128803956-128804119
Length
211 bp
Sequences
Splice sites
3' ss Seq
CTCCTCCTCTTCTCCTCCAGATG
3' ss Score
12.48
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
GAGGTTGTGCCCAGACATTTCCTTCTTCCAGAGGGCCACTGACTACCCTTGCCTCCTCATCCTGGACCCCCAGAATGAGTTTGAAACCCTTCGTAAGAGAGTGGAACAGACAACACTGAAATCTCAGACGGTGGCCCGGAACCGGAGTGGGGTCACAAAT
Seq A exon
ATGAGCTCCCCACACAAGAACTCTGTGCCATCATCCCTAAATGAGTATGAGGTGCTGCCCAATGGCTGTGAGGCCCACTGGGAGGTGGTGGAGCGGATCCTGTTCATCTACGCCAAGCTCAACCCTGGCATCGCTTATGTGCAAGGCATGAATGAAATCGTGGGGCCCCTCTACTACACCTTTGCCACCGACCCCAATAGTGAGTGGAAAG
Seq C2 exon
AGCACGCCGAGGCAGACACCTTTTTCTGCTTCACCAACCTCATGGCCGAGATCCGGGACAACTTTATCAAGAGCCTGGATGACTCGCAGTGTGGCATCACCTACAAGATGGAGAAGGTTTACTCCACCTTGAAAGATAAGGATGTGGAGCTCTACCTGAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107021-'14-19,'14-17,18-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=0.099 C2=0.000
Domain overlap (PFAM):
C1:
PF0056613=RabGAP-TBC=PU(31.9=53.7)
A:
PF0056613=RabGAP-TBC=PU(30.5=71.8)
C2:
PF0056613=RabGAP-TBC=FE(32.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCCTTCTTCCAGAGGGCCA
R:
TCAGGTAGAGCTCCACATCCT
Band lengths:
302-513
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development