GgaEX0006330 @ galGal3
Exon Skipping
Gene
ENSGALG00000004645 | TBC1D13
Description
NA
Coordinates
chr17:5896569-5898379:+
Coord C1 exon
chr17:5896569-5896728
Coord A exon
chr17:5897282-5897489
Coord C2 exon
chr17:5898216-5898379
Length
208 bp
Sequences
Splice sites
3' ss Seq
AGTCTTGCCTTGCTCTTCAGGTG
3' ss Score
8.45
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGGCTGTACCCCGACATGGCATTCTTCCAGCGCCCGACCGACTACCCCTGCCTTCTAATCCTGGACCCCCAAAATGAGTTTGAGACGCTGCGTAAGCGGGTGGAGCAGACCACGCTGAAGTCCCAGACGGTGGCACGGAACCGCAGCGGGGTTACAAAT
Seq A exon
GTGAGCTCCCCTCTTAAATCATCTCCTTCCTCTCTGAGTGAGTACGAAGTTCTGCCCAATGGCTGCGAAGCTCACTGGGAAGTGGTGGAGCGAATCCTTTTCATCTATGCCAAGCTGAACCCCGGGATAGCCTACGTTCAGGGGATGAATGAAATAGTGGGGCCCCTTTACTACACCTTTGCTACAGATCCTAACAGCGAGTGGAAAG
Seq C2 exon
AACACGCTGAAGCTGACACTTTTTTCTGCTTTACCAACCTAATGGCTGAAATTCGGGACAACTTCATTAAGAGCTTGGACGATTCTCAGTGTGGTATAACCTACAAAATGGAGAAGGTCTATTCCACCCTGAAGGAAAAGGATGTGGAGCTGTATTTGAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004645-'7-11,'7-10,8-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.204 A=0.057 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0056613=RabGAP-TBC=PU(29.3=68.6)
C2:
PF0056613=RabGAP-TBC=FE(32.9=100),PF038478=TFIID_20kDa=PU(88.0=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTACCCCGACATGGCATTC
R:
ACATCCTTTTCCTTCAGGGTGG
Band lengths:
301-509
Functional annotations
There are 0 annotated functions for this event