BtaEX6046560 @ bosTau6
Exon Skipping
Description
NA
Coordinates
chr11:99500508-99501332:+
Coord C1 exon
chr11:99500508-99500593
Coord A exon
chr11:99500778-99500923
Coord C2 exon
chr11:99501151-99501332
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCACTCTGCACTGTGTCTAGAGA
3' ss Score
4.63
5' ss Seq
GCGGTAAGG
5' ss Score
9.63
Exon sequences
Seq C1 exon
CTCCTCGTCCCTACCTCCGTGAACTGCCTCCGCCTGGGCTCCATGACGTGCACCCTGCTGCTTATTCTCCTCCGGCAGTGGAAGAG
Seq A exon
AGAGTTAGGGTCTGTGGATGACATCCTTGGGCCCCTGACGGAGATCCTGGAGGGAGTGCTGCAGGCAGACCAGCAGCTTATGGAGAAGACCAAGGCCAAGGTGTTCTCGGCGTTCATCACGGTGCTGCAGATGAAGGAGATGAGCG
Seq C2 exon
TGAATGACATCCCCCAGTACTCCCAGCTGGTGCTGAACGTCTGTGAGACCCTTCAGGAAGAGGTGATCGCACTTTTCGACCACACCCGCCACAGCCTGGCGGCGGGCAGTGCCACCGAGGACAAGGACAGCATGGAGACCGACGACTGCTCCCGGCTCCGGCACAGGGACCAGCGGGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010613-'43-45,'43-44,44-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACCTCCGTGAACTGCCTCC
R:
ATCCCGCTGGTCCCTGTG
Band lengths:
255-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]