DreEX6082859 @ danRer10
Exon Skipping
Gene
ENSDARG00000030022 | nup188
Description
nucleoporin 188 [Source:ZFIN;Acc:ZDB-GENE-030131-7184]
Coordinates
chr21:4422994-4426944:+
Coord C1 exon
chr21:4422994-4423079
Coord A exon
chr21:4425192-4425337
Coord C2 exon
chr21:4426775-4426944
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTGCTGTGTGTGTGTGTCAGTGT
3' ss Score
8.19
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
Exon sequences
Seq C1 exon
CTGCTGATGTCTCAGTCTGTGTTTTGTCTGCGTCTCGGATCGATGATGGTCACGCTGCTCCTCATCCTCCTCAAACAGTGGAAAAG
Seq A exon
TGTGTTGGTGTCGGCTCCAGCTCTCCTGCCGCCTCTGTCTCTGATGCTGGAGAGCGTCCTTCATGCCGAACAGCAGCTCATGGACCGAACCAAAGCCAAACTCCTGTCAGGCCTCATCCTCGCCTTGCAGATTCAGGGACTCAATG
Seq C2 exon
GAGGAGAGATTTCCCAGCTGCCCCAGCTGCTGCTGTGTGTGTGTGAGATGGTTCAGGATGAAGCCCTCGCATTGATTGACAGCACACGTCATATGATCCAGAGAGGTGATGTTCAGGAGGACAGTATGGAGACCGACAGTCCACATGTCCAGAAAGACCAGCAAGACTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000030022-'39-38,'39-37,40-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.263
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTCTGTGTTTTGTCTGCGT
R:
GTCTTGCTGGTCTTTCTGGACA
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]