RnoEX6016289 @ rn6
Exon Skipping
Gene
ENSRNOG00000025185 | Nup188
Description
nucleoporin 188 [Source:RGD Symbol;Acc:1306022]
Coordinates
chr3:8901767-8902638:+
Coord C1 exon
chr3:8901767-8901852
Coord A exon
chr3:8902075-8902220
Coord C2 exon
chr3:8902457-8902638
Length
146 bp
Sequences
Splice sites
3' ss Seq
CCTCTGCCTTGTTCTTTCAGAGA
3' ss Score
11.31
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCCTTGTGGCAACATCAGTGAACTGCCTCCGGCTGGGCTCCATGATGTGCACTCTGCTGCTCATCCTCCTGCGGCAGTGGAAGAG
Seq A exon
AGAGCTGGGTGCTGTGGATAAAATCCTTGGGCCCTTGACAGAGGTCCTGGAAGGGGTGCTCCAGGCAGACCAGCAGCTCATGGAGAAGACCAAGGCCAAGGTGTTCTCTGCATTCATCACAGTGTTACAGATGAAGGAGCTTCGAG
Seq C2 exon
TAAGCGAAATCCCCCAGTACTCCCAGCTGGTGCTGAATGTCTGCGAGACCCTCCAGGAAGAGGTGATTGCACTCTTTGACCAGACCCGCCACAGCCTGGCATCAGGCAGTGCTGCCGAAGACAAAGACAGCATGGAAACAGATGACTGCCCTCGGCCCCGGCACAAGGACCAGCGTGACGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025185-'42-47,'42-44,43-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAACATCAGTGAACTGCCT
R:
CGTCACGCTGGTCCTTGTG
Band lengths:
258-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]