MmuEX6100231 @ mm10
Exon Skipping
Gene
ENSMUSG00000052533 | Nup188
Description
nucleoporin 188 [Source:MGI Symbol;Acc:MGI:2446190]
Coordinates
chr2:30336642-30337405:+
Coord C1 exon
chr2:30336642-30336727
Coord A exon
chr2:30336932-30337077
Coord C2 exon
chr2:30337224-30337405
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCCTTGGTCTTTCAGAGA
3' ss Score
9.92
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CTCCTTGTGGCAGCATCTGTGAACTGCCTCCGGCTGGGCTCCATGATGTGCACCCTGCTGCTTATCCTCCTACGCCAGTGGAAGAG
Seq A exon
AGAGCTGGGTGCTGTGGAGAAAATCCTTGGGCCCTTGACAGAGATCCTGGAAGGGGTGCTTCAGGCAGACCAGCAGCTCATGGAAAAGACCAAGGCCAAGGTGTTCTCTGCATTCATCACAGTGTTACAGATGAAGGAGCTGCGAG
Seq C2 exon
TCGGTGATATCCCCCAGTACTCCCAGCTGGTGCTGAACGTCTGTGAGACTCTCCAAGAAGAGGTGATTGCACTCTTTGATCAGACCCGCCACAGCCTGGCATCCGACAGCGCTGCCGAGGACAAGGACAGCATGGAGACAGATGACTGCCCTCGGCCCCGGCACAAGGACCAGCGTGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000052533-'45-69,'45-58,55-69=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.328
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCATCTGTGAACTGCCTCC
R:
CCATCACGCTGGTCCTTGTG
Band lengths:
257-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types