GgaEX1040872 @ galGal4
Exon Skipping
Gene
ENSGALG00000004548 | NUP188
Description
nucleoporin NUP188 homolog [Source:RefSeq peptide;Acc:NP_001025861]
Coordinates
chr17:5422699-5424680:+
Coord C1 exon
chr17:5422699-5422784
Coord A exon
chr17:5423189-5423334
Coord C2 exon
chr17:5424499-5424680
Length
146 bp
Sequences
Splice sites
3' ss Seq
CTCTTCCTTTTTGTTGTCAGCGA
3' ss Score
6.82
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
CTTCTAGTTCCCATGTCGGTATCTTGTCTGCAGCTGGGCTCTATGCTGTGTACCCTTCTTCTCATCCTGCTGAGGCAGTGGAAGAG
Seq A exon
CGAGTTGGGTTCTGTGGATAAAATCATAAACTCCTTGACGCAGATTCTGGAGGGAGTACTACAGGCAGATCAGCAGATGATGGAGAAAACCAAAGCCAAAGTGTTCTCAGCTCTTATCACTGTGCTGCAGATGAAGGAGATGAAAG
Seq C2 exon
TGAATGAGATCCCTCAGTACTCCCAGCTGGTGCTGAGTGTGTGTGAAACTCTCCAGGATGAGGTCATTGCACTCTTTGATCAGACTCGACATAGCCTGACCTTGGGGGATGCCACAGATGACAAGGACAGCATGGAAACAGATGATGCCTCCCGAGTTAAACACAAGGACCAGCGAGATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004548_MULTIEX2-2/3=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.279
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTATCTTGTCTGCAGCTGG
R:
CATCTCGCTGGTCCTTGTGTT
Band lengths:
250-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]