BtaEX6046609 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001932 | MGC142781
Description
Bos taurus carnitine O-acetyltransferase (CRAT), mRNA. [Source:RefSeq mRNA;Acc:NM_001075587]
Coordinates
chr11:99581859-99583145:-
Coord C1 exon
chr11:99583092-99583145
Coord A exon
chr11:99582371-99582536
Coord C2 exon
chr11:99581859-99582033
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTGTCCCTCTGCCCCTGCAGCGA
3' ss Score
11.06
5' ss Seq
CAAGTGGGT
5' ss Score
4.82
Exon sequences
Seq C1 exon
GTTCGCTGCCAAATTAATCGAGGGCGTGTTGGATTTCAAGGCCATGATTGACAA
Seq A exon
CGAGACCCTGCCCGTGGAGTACCTGGGGGGCAAGCCACTGTGCATGAACCAGTACTATCAGATCCTGTCGTCCTGCCGTGTGCCAGGCCCCAAGCAGGATTTGGTCACCAAGTTCAGCAGGACCAAGAAGCCGCCTATGCACATCACCGTGGTGCACAACTACCAA
Seq C2 exon
TTTTTTGAGTTGGATGTGTACCACAGCGATGGGACACCCCTGACCTCAGATCAGATCTTCATGCAGCTGGAGAAGGTCTGGAACTCGTCACTGCAAACCAACAAGGAGCCCGTGGGCATCCTCACCTCCAACCACCGTAACTCCTGGGCCAAGGCCTACAGCACCCTCATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001932-'9-16,'9-15,10-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.036 C2=0.017
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(3.1=100)
A:
PF0075515=Carn_acyltransf=FE(9.4=100)
C2:
PF0075515=Carn_acyltransf=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTGCCAAATTAATCGAGGG
R:
TTTGATGAGGGTGCTGTAGGC
Band lengths:
226-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]