DreEX6011763 @ danRer10
Exon Skipping
Gene
ENSDARG00000040248 | crata
Description
carnitine O-acetyltransferase a [Source:ZFIN;Acc:ZDB-GENE-040927-17]
Coordinates
chr5:32220360-32223701:+
Coord C1 exon
chr5:32220360-32220413
Coord A exon
chr5:32220545-32220710
Coord C2 exon
chr5:32223527-32223701
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGTCATTGCTCTTTGATTAGTGA
3' ss Score
4.88
5' ss Seq
CAGGTTCGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
ATATGCTGCTAAATTGATTGCAGGGGTTTTAGATTTCAAGAGCATGATTGACAA
Seq A exon
TGAAACATTGCCGTTGGAGTATCTGGGTGGAAAGCCACTCTGCATGCACCAATACTATCAGGTGCTCTCGTCCTGCCGCATCCCTGGAACAAAGAGGGACACTGTGGTCAACTACGCCATGGACAAAAGACCCTCCACACACATCACTGTGGTGCATAACTTCCAG
Seq C2 exon
TTCTTTGTGCTGGATGTGTACAACAGTGACGGCACACCACTGACTGTAGACCAGATCTATATACAGCTAGAGAAGATCTGGAACTCCTCCTTACAGACCAACAAAGAGCCAATTGGCATCCTCACCTCCAACCACCGCAACAGCTGGGGCAAAGCTTACAACAACCTCATTAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040248-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(3.1=100)
A:
PF0075515=Carn_acyltransf=FE(9.4=100)
C2:
PF0075515=Carn_acyltransf=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCTAAATTGATTGCAGGG
R:
CCTTAATGAGGTTGTTGTAAGCTT
Band lengths:
226-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]