GgaEX0006004 @ galGal4
Exon Skipping
Gene
ENSGALG00000004466 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:HGNC:2342]
Coordinates
chr17:5501293-5502889:-
Coord C1 exon
chr17:5502836-5502889
Coord A exon
chr17:5502047-5502212
Coord C2 exon
chr17:5501293-5501467
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACGCCTTGCTGTATCTTCAGTGA
3' ss Score
6.09
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTTTGCTGCCAAGCTGATCGAGGGCATCCTGGATTTCAAGACCATGATTGACAA
Seq A exon
TGAGACCCTCCCAGTGGAGTACATGGGTGGGAAGCCCCTCTGCATGAACCAGTACTACCAGATCCTTTCATCCTGCCGCATTCCCGGGCCCAAGCGGGACTCCATTGTCAACTACGCCAAGGGCAAGAAGCAGTCCAGACACATCACAGTGGTTCACAACTTCCAG
Seq C2 exon
TTCTTTGAGCTGGATGTGTACAACAGTGATGGTAGCCCCCTAACCACCGACCAGATCTTTATTCAGCTGGAGAAGATCTGGAACACCTCCCTCCAAACAAACAAAGAACCTATTGGAATCCTCACCACCAACCACCGAAACAGCTGGGCAAAAGCCTACAACAACCTTCTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004466_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(3.1=100)
A:
PF0075515=Carn_acyltransf=FE(9.4=100)
C2:
PF0075515=Carn_acyltransf=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCTGATCGAGGGCATCC
R:
TTCAGAAGGTTGTTGTAGGCT
Band lengths:
218-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]