HsaEX6063400 @ hg19
Exon Skipping
Gene
ENSG00000095321 | CRAT
Description
carnitine O-acetyltransferase [Source:HGNC Symbol;Acc:2342]
Coordinates
chr9:131864162-131865345:-
Coord C1 exon
chr9:131865292-131865345
Coord A exon
chr9:131864679-131864844
Coord C2 exon
chr9:131864162-131864336
Length
166 bp
Sequences
Splice sites
3' ss Seq
ACTGCCCCTCTACCCCATAGCGA
3' ss Score
8.14
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATTTGCTGCCAAACTCATTGAGGGTGTGTTGGATTTCAAGGTCATGATTGACAA
Seq A exon
CGAGACCCTGCCCGTGGAGTACCTGGGGGGGAAGCCACTGTGCATGAACCAGTACTATCAGATCTTGTCCTCCTGCCGAGTGCCGGGCCCCAAGCAGGACACAGTCAGCAACTTCAGCAAGACCAAGAAGCCTCCCACGCACATCACCGTGGTACACAACTACCAG
Seq C2 exon
TTTTTTGAGCTGGATGTGTACCACAGTGACGGGACACCCCTCACTGCGGATCAGATCTTTGTGCAGCTGGAGAAGATCTGGAACTCATCCCTACAGACCAACAAGGAGCCTGTGGGCATCCTCACCTCCAACCACCGCAACTCCTGGGCCAAGGCATACAACACCCTCATCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095321-'12-14,'12-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.143 C2=0.017
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(3.1=100)
A:
PF0075515=Carn_acyltransf=FE(9.4=100)
C2:
PF0075515=Carn_acyltransf=FE(9.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTGCCAAACTCATTGAGGG
R:
CTTTGATGAGGGTGTTGTATGCCT
Band lengths:
226-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)