MmuEX0012658 @ mm10
Exon Skipping
Gene
ENSMUSG00000026853 | Crat
Description
carnitine acetyltransferase [Source:MGI Symbol;Acc:MGI:109501]
Coordinates
chr2:30407706-30408794:-
Coord C1 exon
chr2:30408741-30408794
Coord A exon
chr2:30408056-30408221
Coord C2 exon
chr2:30407706-30407880
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTTCCTGTGTCCACCCACAGTGA
3' ss Score
9.35
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTTTGCTGCCAAACTCATCGAGGGTGTATTGGATTTCAAGTCCATGATTGACAA
Seq A exon
TGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCGCTGTGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCCGGCCCCAAGCAGGACTCAGTGGTGAACTTCTTAAAGTCAAAGAGACCACCCACGCATATAACCGTGGTGCATAACTACCAG
Seq C2 exon
TTCTTCGAGCTGGATGTGTACCACAGTGACGGAACACCGCTCACCTCAGATCAGATCTTTGTGCAGCTAGAGAAAATATGGAATTCCTCACTGCAATCCAACAAAGAGCCTGTTGGCATCCTAACCTCCAACCACCGAAACACCTGGGCCAAGGCCTACAACAACCTCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026853_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.002 C2=0.017
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(10.5=100)
A:
PF0075515=Carn_acyltransf=FE(9.4=100)
C2:
PF0075515=Carn_acyltransf=FE(9.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCCAAACTCATCGAGG
R:
TTTAATGAGGTTGTTGTAGGCCT
Band lengths:
226-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types