RnoEX0024396 @ rn6
Exon Skipping
Gene
ENSRNOG00000018145 | Crat
Description
carnitine O-acetyltransferase [Source:RGD Symbol;Acc:1303031]
Coordinates
chr3:8973798-8974855:-
Coord C1 exon
chr3:8974802-8974855
Coord A exon
chr3:8974160-8974325
Coord C2 exon
chr3:8973798-8973972
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTTCCTGTGTCCTCCCACAGCGA
3' ss Score
11.16
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GTTTGCTGCCAAACTCATCGAGGGTGTATTGGATTTCAAGTCCATGATTGACAA
Seq A exon
CGAGACGCTGCCAGTTGAGTTCCTGGGAGGACAGCCACTGTGCATGAACCAGTATTATCAGATCCTGTCTTCTTGCCGTGTGCCTGGCCTCAAGCAGGACTCAGTGGTGAACTTCTTAAAGTCAAAGAAACCACCCACACATATAACCGTGGTGCATAACTACCAG
Seq C2 exon
TTCTTCGAGCTGGATGTGTACCACAGTGATGGGACACCACTCACCTCAGATCAGATCTTTGTGCAGCTTGAGAAAATCTGGAACTCCTCACTGCAATCCAACAAGGAGCCTGTTGGCATCCTAACCTCCAACCACCGGAACAGCTGGGCCAAGGCCTACAGCAGCCTCATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018145_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF0075515=Carn_acyltransf=FE(3.1=100)
A:
PF0075515=Carn_acyltransf=FE(23.0=100)
C2:
PF0075515=Carn_acyltransf=FE(24.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGCCAAACTCATCGAGG
R:
GGCTGCTGTAGGCCTTGG
Band lengths:
218-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]