BtaEX6046685 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004204 | GPR107
Description
Bos taurus G protein-coupled receptor 107 (GPR107), mRNA. [Source:RefSeq mRNA;Acc:NM_001099164]
Coordinates
chr11:100447331-100451583:+
Coord C1 exon
chr11:100447331-100447368
Coord A exon
chr11:100448830-100448886
Coord C2 exon
chr11:100451473-100451583
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTTGTTAATGTCTTTTTTAGGCA
3' ss Score
8.74
5' ss Seq
CAGGTACGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
AAAGTGGAAAGTCTAAAAGAAGTACCGTGGATTCAAAG
Seq A exon
GCAACAGGAGAGAAATCCTTTTCTGTTCATAATAATGATGGGGCGGTTTCATTCCAG
Seq C2 exon
TTTTTCTTTAACATCAGCACTGATGACCAAGAAGGCCTCTACAGTCTTTATTTTCATAAGTGTCTTGGAAGTGACGCTTGGTCTAATGACAAGTTTTCGTTCAGCCTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004204-'9-11,'9-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.053 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068148=Lung_7-TM_R=PU(9.9=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAGTCTAAAAGAAGTACCGTGG
R:
AGGCTGAACGAAAACTTGTCA
Band lengths:
141-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]