RnoEX0039576 @ rn6
Exon Skipping
Gene
ENSRNOG00000023589 | Gpr107
Description
G protein-coupled receptor 107 [Source:RGD Symbol;Acc:1305882]
Coordinates
chr3:10669627-10672572:-
Coord C1 exon
chr3:10672535-10672572
Coord A exon
chr3:10670619-10670675
Coord C2 exon
chr3:10669627-10669737
Length
57 bp
Sequences
Splice sites
3' ss Seq
AGAGTCTTGTGTCTTTTCAGACT
3' ss Score
7.84
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATGGTTCCAAGGCTCAACGAAGTACAGTGGATTCAAAG
Seq A exon
ACTATAGCAGAGAAATTCTTCTCAATTCATAAGAATGATGGGGCAGTTTCATTTCAG
Seq C2 exon
TTCTTCTTTAACATCAGCACCAGTGACCAGGAAGGCCTCTACAGCCTTTACTTCCACAAGTGCCCAAGCAGCAAGCTGAGGTCTGGTGAGCAGGTCTCATTCAGCCTAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023589_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.654 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068148=Lung_7-TM_R=PU(35.4=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCCAAGGCTCAACGAAG
R:
GAGACCTGCTCACCAGACCTC
Band lengths:
135-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]