GgaEX0005413 @ galGal4
Exon Skipping
Gene
ENSGALG00000004052 | GPR107
Description
protein GPR107 precursor [Source:RefSeq peptide;Acc:NP_001025857]
Coordinates
chr17:5830498-5831409:+
Coord C1 exon
chr17:5830498-5830532
Coord A exon
chr17:5830730-5830786
Coord C2 exon
chr17:5831299-5831409
Length
57 bp
Sequences
Splice sites
3' ss Seq
GTTTATTTTCTTTTTCCCAGAGC
3' ss Score
8.91
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
ATACGAAGTCCAAACGAAGTACAACATCCTCTCAG
Seq A exon
AGCATAGTAGAACAAAAGCATCCTGTTCACAACGACAGAGGAACTATCTCATTCCAG
Seq C2 exon
TTTTTCTTTAACATCAGTTCTGATGACCAAGAGGGTCTCTACAGCCTGTATTTCCATAAGTGTATTGGCAGTGAAGGGAAAACTCGTGATCAGCAGCTATTTAGTCTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004052_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.368 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068148=Lung_7-TM_R=PU(9.9=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGTCCAAACGAAGTACAACA
R:
TAGCTGCTGATCACGAGTTTTCC
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]