MmuEX6100330 @ mm10
Exon Skipping
Gene
ENSMUSG00000000194 | Gpr107
Description
G protein-coupled receptor 107 [Source:MGI Symbol;Acc:MGI:2139054]
Coordinates
chr2:31174202-31177895:+
Coord C1 exon
chr2:31174202-31174239
Coord A exon
chr2:31176898-31176954
Coord C2 exon
chr2:31177785-31177895
Length
57 bp
Sequences
Splice sites
3' ss Seq
ACTGTTGTGTGTCTTTTCAGGCT
3' ss Score
11.12
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGGTTTCAAGGCTGGACGAAGTACAGTGGACTCAAAG
Seq A exon
GCTATCACAGAGCGATCCTTCTCAATTCACAAGAATGACGGGGTGGTCTCATTTCAG
Seq C2 exon
TTCTTCTTTAACATCAGCACCGATGACCAGGAAGGCCTCTACAGCCTTTACTTCCACAAGTGCTCAGGCAACAACGTGAAGCCTGGTGAACAGGCCTCATTCAGCCTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000194-'23-12,'23-11,24-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.077 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068148=Lung_7-TM_R=PU(11.8=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTTCAAGGCTGGACGAAG
R:
GCTGAATGAGGCCTGTTCACC
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types