DreEX0035779 @ danRer10
Exon Skipping
Gene
ENSDARG00000103200 | gpr107
Description
G protein-coupled receptor 107 [Source:ZFIN;Acc:ZDB-GENE-061103-130]
Coordinates
chr5:31884640-31885124:-
Coord C1 exon
chr5:31885099-31885124
Coord A exon
chr5:31884924-31884980
Coord C2 exon
chr5:31884640-31884762
Length
57 bp
Sequences
Splice sites
3' ss Seq
AGATTTTTCCCTTTCCCTAGAAC
3' ss Score
9.17
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CTTCTAAATCCAAGCGTGATGCTGAG
Seq A exon
AACAAGGCAGAAGATACCTATCCTCTTCAGTACGAAGATAACGGCTACTCCTTCCAG
Seq C2 exon
TTTTACTTCAATGTCACTACCGATGAGCAGCAGGGCCTTTATAACTTTTACTTCTACAACTGCTACTCTTTGCCAATGAACCAGGAGAGCTCTGTGTCAGACATGCTGCCTTTCAGCATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103200-'8-10,'8-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068148=Lung_7-TM_R=PU(11.1=80.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTAAATCCAAGCGTGATGC
R:
CAGCATGTCTGACACAGAGCT
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]