HsaEX0028226 @ hg19
Exon Skipping
Gene
ENSG00000148358 | GPR107
Description
G protein-coupled receptor 107 [Source:HGNC Symbol;Acc:17830]
Coordinates
chr9:132845844-132853262:+
Coord C1 exon
chr9:132845844-132845881
Coord A exon
chr9:132848699-132848755
Coord C2 exon
chr9:132853155-132853262
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATACTATTATGTCTTTTTAGGCC
3' ss Score
9.49
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ATGGTGGAAAGTCTAAAAGAAGTACAGTGGATTCAAAG
Seq A exon
GCCATGGGAGAGAAATCCTTTTCTGTTCATAATAATGGTGGGGCAGTGTCATTTCAG
Seq C2 exon
TTTTTCTTTAACATCAGCACTGATGACCAAGAAGGCCTTTACAGTCTTTATTTTCATAAATGCCTTGGAAAAGAATTGCCAAGTGACAAGTTTACATTCAGCCTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148358_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF068148=Lung_7-TM_R=PU(12.4=77.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGAAAGTCTAAAAGAAGTACA
R:
GGCTGAATGTAAACTTGTCACTTGG
Band lengths:
140-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)