BtaEX6046788 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100946231-100949211:+
Coord C1 exon
chr11:100946231-100946311
Coord A exon
chr11:100946449-100946525
Coord C2 exon
chr11:100949140-100949211
Length
77 bp
Sequences
Splice sites
3' ss Seq
ATGGCCCTTGTCCTCCGCAGTGG
3' ss Score
8.65
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CACCTTTCCTCCAAGGAGCTCAGGGTGCTTCCCAAACATTGCTGCTAAAGTGAACGGAAACCCCCATAGCGCCCCTGTGAG
Seq A exon
TGGTCCTCCCGCCTTTCTGACCCAGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAGCAGGTTCCAA
Seq C2 exon
GCCAGCAGAGCCAGCCGCAGAGCAGCCAGCCCGACTACAGCAAGGCCTGGGAGGACTACTACAAAAAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072-'29-27,'29-25,30-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.852 C2=0.880
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=PU(62.9=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAAGGAGCTCAGGGTG
R:
TTGTAGTAGTCCTCCCAGGCC
Band lengths:
138-215
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]