HsaEX0026572 @ hg38
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr9:130631942-130636126:+
Coord C1 exon
chr9:130631942-130632022
Coord A exon
chr9:130632202-130632278
Coord C2 exon
chr9:130635999-130636126
Length
77 bp
Sequences
Splice sites
3' ss Seq
GACCCTCTTGTTATCCACAGTGG
3' ss Score
8.8
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
TACCTTTCCTCCAAGGAGCTCCGGGTGCTTCCCAAACATGGCTGCCAAGGTGAATGGGAACCCCCACAGCACCCCTGTGAG
Seq A exon
TGGTCCTCCGGCCTTTCTGACCCAGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAGCAGGTCCCAA
Seq C2 exon
GTCACGCCGCCAGCGCTGCTCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGGCAGAATATTACAGACAGCAGGTCGCTTTCTACGGACAGACGTTAGGGCAGGCGCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164_MULTIEX1-6/8=5-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.833 C2=0.558
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGCTTCCCAAACATGGCT
R:
TGCCCTAACGTCTGTCCGTAG
Band lengths:
167-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development