RnoEX0037100 @ rn6
Exon Skipping
Gene
ENSRNOG00000009139 | Fubp3
Description
far upstream element binding protein 3 [Source:RGD Symbol;Acc:1307004]
Coordinates
chr3:10224176-10226286:-
Coord C1 exon
chr3:10226215-10226286
Coord A exon
chr3:10226011-10226087
Coord C2 exon
chr3:10224176-10224247
Length
77 bp
Sequences
Splice sites
3' ss Seq
GCATTCTCTGTCATCCACAGCGG
3' ss Score
9.71
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
CACCTTTCCCCCCAGGGCCTTCCCCAACATCGCTGCTAAAGTTAACGGGAACCCCCACAGCACCCCTGTGAG
Seq A exon
CGGCCCTCCAGCTTTTCTGACCCAAGGCTGGGGCAGCACTTACCAGGCTTGGCAGCAGCCTACACAGCAAGTCCCAA
Seq C2 exon
GCCAGCAGAGCCAGCCACAGAACAGCCAGCCCGACTACAGCAAGGCCTGGGAAGACTATTACAAAAAACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009139-'25-31,'25-28,26-31
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.919 A=0.775 C2=0.893
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=PU(66.7=88.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCCAACATCGCTGCTAA
R:
TTTGTAATAGTCTTCCCAGGCCT
Band lengths:
119-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]