GgaEX1025679 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5941831-5946701:+
Coord C1 exon
chr17:5941831-5941904
Coord A exon
chr17:5942360-5942436
Coord C2 exon
chr17:5946574-5946701
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGCCTTTTTATCCTCTGCAGTGG
3' ss Score
8.72
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GGTACCAGCATGGGTGGACCTGGAGGATTTGGTCAGAGTCCGTTCAACCAAGCACCCACTACACCTCATCAAAA
Seq A exon
TGGTCCTCAGGCGTTCATGACGCAGGGTTGGGGCAGTACCTACCAGACGTGGCAGCAGCCTGGACAGCAAGTCCCAA
Seq C2 exon
GTCATGCTGCCAGCGCTGCTTCTCAGGCGAGCTCCCAGCCGGACTACACGATGGCCTGGGCAGAGTATTACAGACAGCAGGCTGCCTACTACGGGCAGACACTAGGGCAGGCGCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941_MULTIEX2-2/4=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.898 C2=0.416
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=PD(30.3=23.3),PF090055=DUF1897=WD(100=76.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGGTGGACCTGGAGGATTT
R:
CCCTAGTGTCTGCCCGTAGTA
Band lengths:
172-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]