DreEX6008856 @ danRer10
Exon Skipping
Gene
ENSDARG00000086896 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:HGNC:4005]
Coordinates
chr5:873092-875653:+
Coord C1 exon
chr5:873092-873165
Coord A exon
chr5:875432-875508
Coord C2 exon
chr5:875585-875653
Length
77 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGTCAGTGG
3' ss Score
7.93
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCGTCTGGAATGGGAGGAAACAGCAGTTTTGGACTCAGTCCTTTCACTCAAGGACCTGCGACTCCTCATCAGAA
Seq A exon
TGGGCCGCAGACGTTCATGACCGGAGGTTGGGGCACCACCTATCAGACGTGGCAGCCTCAGAGTCAGCAGGACCCCA
Seq C2 exon
GTCACAACGGCTCTCAGAGCGGACAGATGGACTACTCCAAAGCCTGGGAGCAGTATTATAAGAAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086896-'19-23,'19-22,20-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF090055=DUF1897=PU(75.9=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTCTGGAATGGGAGGAAAC
R:
CTAGCTTCTTATAATACTGCTCCCA
Band lengths:
143-220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]