HsaEX0026572 @ hg19
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133501751-133511513:+
Coord C1 exon
chr9:133501751-133501892
Coord A exon
chr9:133507589-133507665
Coord C2 exon
chr9:133511386-133511513
Length
77 bp
Sequences
Splice sites
3' ss Seq
GACCCTCTTGTTATCCACAGTGG
3' ss Score
8.8
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
GAAAGAGACGGCTTTGGAGGCCTGGCAGCAGCCAGAGGAAGAGGTCGTGGCCGTGGCGACTGGAGCGTGGGAGCCCCTGGTGGCGTCCAGGAGATAACATACACGGTGCCAGCCGATAAGTGTGGCCTCGTCATAGGCAAAG
Seq A exon
TGGTCCTCCGGCCTTTCTGACCCAGGGCTGGGGCAGCACCTACCAGGCGTGGCAGCAGCCCACACAGCAGGTCCCAA
Seq C2 exon
GTCACGCCGCCAGCGCTGCTCCTCAGGCCAGCTCCCCACCGGACTACACAATGGCCTGGGCAGAATATTACAGACAGCAGGTCGCTTTCTACGGACAGACGTTAGGGCAGGCGCAGGCCCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164_MULTIEX2-5/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.347 A=0.852 C2=0.472
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PU(25.8=35.4)
A:
NO
C2:
PF090055=DUF1897=WD(100=74.4)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGCGTCCAGGAGATAACA
R:
GCCCTAACGTCTGTCCGTAGA
Band lengths:
172-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)