BtaEX6046792 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013072 | FUBP3
Description
Bos taurus far upstream element (FUSE) binding protein 3 (FUBP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101217]
Coordinates
chr11:100938802-100945074:+
Coord C1 exon
chr11:100938802-100938902
Coord A exon
chr11:100941135-100941276
Coord C2 exon
chr11:100944914-100945074
Length
142 bp
Sequences
Splice sites
3' ss Seq
GAGCTCCGCTTCCTTCCCAGGAA
3' ss Score
7.99
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGACGGTATTAGTCCGGAGAGAGCTGCACAGGTGATGGGACCCCCGGATCGATGCCAGCATGCAGCACATGTCATCAGCGAGCTTATTCTTACAGCACAG
Seq A exon
GAAAGAGACGGCTTCGGAGGCCTGGCGGTGGCCAGGGGGAGAGGCCGCGGCCGTGGCGACTGGAGCGTGGGGACCCCCGGCGGCATCCAGGAGGTGACCTACACTGTGCCGGCCGACAAGTGCGGCCTCGTCATCGGCAAAG
Seq C2 exon
GGGGCGAGAACATCAAGAGCATAAACCAGCAGTCGGGAGCACACGTGGAGCTTCAGCGGAACCCCCCTCCCAGCACTGACCCCAACCTGCGGATATTCACCATCCGGGGGCTCCCTCCGCAGATCGAGGTGGCCAGACACCTCATAGATGAGAAAGTCGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013072-'21-19,'21-16,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.529 A=0.385 C2=0.639
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(39.7=73.5)
A:
PF0001324=KH_1=PU(25.8=35.4)
C2:
PF0001324=KH_1=PD(72.7=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTAGTCCGGAGAGAGCTGCA
R:
TCATCTATGAGGTGTCTGGCCA
Band lengths:
244-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]