GgaEX1025671 @ galGal4
Exon Skipping
Gene
ENSGALG00000003941 | FUBP3
Description
far upstream element-binding protein 3 [Source:RefSeq peptide;Acc:NP_001006199]
Coordinates
chr17:5935381-5941003:+
Coord C1 exon
chr17:5935381-5935481
Coord A exon
chr17:5936716-5936857
Coord C2 exon
chr17:5940843-5941003
Length
142 bp
Sequences
Splice sites
3' ss Seq
GAAATTCTTTGCCTTCCAAGGAA
3' ss Score
5.28
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
ATGATGGGATTAGTCCTGAAAGAGTCGCACAGGTCATGGGGCTTCCCGATAGGTGTCAACACGCAGCACACATCATCAGCGAGCTTATTCTTACAGCACAG
Seq A exon
GAACGAGATGGCTTTGGAAGTTTGGCTGTAGCCCGGGGAAGAGGTCGTGGCCGTGGGGACTGGAGTGTTGGAACACCTGGGGGCATGCAGGAAATAACCTACACGGTGCCAGCTGACAAGTGCGGTCTCGTTATAGGCAAAG
Seq C2 exon
GTGGTGAGAACATCAAGAGCATAAATCAGCAGTCAGGAGCCCACGTGGAGCTGCAGAGAAACCCACCTCCGAACACAGACCCTGGTGTACGAATATTCACAATCAGAGGAGTTCCCCAGCAGATTGAACTTGCTAGACATCTCATAGATGAGAAAGTTGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003941-'27-26,'27-25,30-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.206 A=0.417 C2=0.718
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(39.7=73.5)
A:
PF0001324=KH_1=PU(25.8=35.4)
C2:
PF0001324=KH_1=PD(72.7=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGATTAGTCCTGAAAGAGTCG
R:
GAGATGTCTAGCAAGTTCAATCTGC
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]