HsaEX6063519 @ hg19
Exon Skipping
Gene
ENSG00000107164 | FUBP3
Description
far upstream element (FUSE) binding protein 3 [Source:HGNC Symbol;Acc:4005]
Coordinates
chr9:133498998-133506175:+
Coord C1 exon
chr9:133498998-133499098
Coord A exon
chr9:133501751-133501892
Coord C2 exon
chr9:133506015-133506175
Length
142 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTGTGATCTTTCCAGGAA
3' ss Score
7.91
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGATGGGATTAGTCCAGAAAGAGCTGCCCAGGTCATGGGCCCTCCGGATCGGTGTCAGCATGCAGCGCATATCATCAGCGAGCTGATTCTTACAGCCCAG
Seq A exon
GAAAGAGACGGCTTTGGAGGCCTGGCAGCAGCCAGAGGAAGAGGTCGTGGCCGTGGCGACTGGAGCGTGGGAGCCCCTGGTGGCGTCCAGGAGATAACATACACGGTGCCAGCCGATAAGTGTGGCCTCGTCATAGGCAAAG
Seq C2 exon
GGGGTGAGAACATCAAAAGCATCAACCAGCAGTCAGGGGCGCACGTGGAGCTTCAGAGGAACCCCCCTCCCAACAGCGACCCCAACCTGCGGAGATTCACCATCAGGGGGGTTCCCCAGCAGATCGAGGTGGCCAGGCAGCTCATAGATGAGAAAGTTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107164-'20-20,'20-18,21-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.347 C2=0.765
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(39.7=73.5)
A:
PF0001324=KH_1=PU(25.8=35.4)
C2:
PF0001324=KH_1=PD(72.7=88.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTCCAGAAAGAGCTGCCCA
R:
CTCATCTATGAGCTGCCTGGC
Band lengths:
243-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)